Index

A

autodock_vina_run() (in module vina.autodock_vina_run)

AutoDockVinaRun (class in vina.autodock_vina_run)

B

BindingSite (class in utils.bindingsite) bindingsite() (in module utils.bindingsite) Box (class in utils.box)

box() (in module utils.box) box_residues() (in module utils.box_residues) BoxResidues (class in utils.box_residues) build_cmd() (gnina.gnina_run.GninaRun method)

C

calculate_box() (gnina.gnina_run.GninaRun method) (vina.autodock_vina_run.AutoDockVinaRun method) check_data_params() (fpocket.fpocket_filter.FPocketFilter method) (fpocket.fpocket_run.FPocketRun method) (fpocket.fpocket_select.FPocketSelect method) (gnina.gnina_run.GninaRun method) (gnina.gnina_select_pose.GninaSelectPose method) (utils.bindingsite.BindingSite method) (utils.box.Box method) (utils.box_residues.BoxResidues method) (utils.extract_model_pdbqt.ExtractModelPDBQT method) (vina.autodock_vina_run.AutoDockVinaRun method)

cmd_path() (gnina.gnina_run.GninaRun method)

D

druggability_score_matcher() (fpocket.fpocket_filter.FPocketFilter method)

E

extract_model_pdbqt() (in module utils.extract_model_pdbqt)

ExtractModelPDBQT (class in utils.extract_model_pdbqt)

F

fpocket.fpocket_filter module fpocket.fpocket_run module fpocket.fpocket_select module

fpocket_filter() (in module fpocket.fpocket_filter) fpocket_run() (in module fpocket.fpocket_run) fpocket_select() (in module fpocket.fpocket_select) FPocketFilter (class in fpocket.fpocket_filter) FPocketRun (class in fpocket.fpocket_run) FPocketSelect (class in fpocket.fpocket_select)

G

gnina.gnina_run module gnina.gnina_select_pose module

gnina_run() (in module gnina.gnina_run) gnina_select_pose() (in module gnina.gnina_select_pose) GninaRun (class in gnina.gnina_run) GninaSelectPose (class in gnina.gnina_select_pose)

L

launch() (fpocket.fpocket_filter.FPocketFilter method) (fpocket.fpocket_run.FPocketRun method) (fpocket.fpocket_select.FPocketSelect method) (gnina.gnina_run.GninaRun method) (gnina.gnina_select_pose.GninaSelectPose method) (utils.bindingsite.BindingSite method) (utils.box.Box method) (utils.box_residues.BoxResidues method) (utils.extract_model_pdbqt.ExtractModelPDBQT method) (vina.autodock_vina_run.AutoDockVinaRun method)

M

module fpocket.fpocket_filter fpocket.fpocket_run fpocket.fpocket_select gnina.gnina_run gnina.gnina_select_pose utils.bindingsite utils.box utils.box_residues utils.extract_model_pdbqt vina.autodock_vina_run

S

score_matcher() (fpocket.fpocket_filter.FPocketFilter method) select_record() (gnina.gnina_select_pose.GninaSelectPose method)

SORT_ORDERS (gnina.gnina_select_pose.GninaSelectPose attribute) SWITCH_FLAGS (gnina.gnina_run.GninaRun attribute)

U

utils.bindingsite module utils.box module

utils.box_residues module utils.extract_model_pdbqt module

V

VALUE_FLAGS (gnina.gnina_run.GninaRun attribute) vina.autodock_vina_run module

volume_matcher() (fpocket.fpocket_filter.FPocketFilter method)